HARMONI

  • joint Bayesian analysis of pooled and subtype/state-specific molecular association statistics..

TASTE

  • TASTE (Trans Association using Shared factorization and TEsting), a summary-statistic based method that identifies shared protein modules (or any other omics) regulated by disease-associated variants across related traits and diseases.

PathWeb

  • Visualization interface for results from gene-set association analysis of over 10,000 gene-sets and 1,403 binary phenotypes in UK BioBank

PWAS

  • R-shiny Application for visualizing cis-association and fine-mapping results for around 2,000 proteins in ARIC study

MultiSKAT

  • R package to test multiple phenotype associations of rare variants

MetaMultiSKAT

  • R package for rare variant meta-analysis of multiple phenotypes using summary statistics

GAUSS

  • R package for subset-based gene-set analysis method (GAUSS)

ARCHIE

  • R-codes for summary-based sparse canonical correlation analysis in large-scale trans-eQTL studies.